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BRAF Gene Testing
Also known as : [Colorectal cancer/CRC],[Gene mutation testing],[Lung cancer],[Mass array],[Melanoma],[Papillary thyroid carcinoma]


FFPET
Test performed by: LabPLUS Diagnostic Genetics


Specimen Collection

Tumour type

Papillary thyroid carcinoma

Melanoma

Please send all requests to the histology laboratory holding the FFPET block

(for slide preparation & histopathologist assessment);

1) For FFPET samples NOT held at LabPlus;

send the request form to the histology laboratory holding the block.

2) For FFPET samples held at LabPlus;

Please send the request form to LabPlus histology laboratory

[Contacts: Tania Smith ( TaniaS@adhb.govt.nz ); Tanya Fulton ( TanyaF@adhb.govt.nz ) ;

Elaine McGrath ( EMcGrath@adhb.govt.nz ) ; Debbie O'Regan ( DebbieO@adhb.govt.nz )]

Referral and specimen requirements;

Slides;

1) Four unstained slides of 5 micron sections from formalin-fixed, paraffin-embedded (FFPE) block

2) An H&E slide marked by the Histopathologist

NB. Slides and paperwork MUST have two points of matching ID (block number and Name/NHI).

3) The original requesting doctor and location must be clearly stated on the LabPlus request form.

Download: - DG req form - fillable.pdf

Diagnostic Genetics Request Form


Turnaround Time: Between 1 day and 1 week

5 working days

For more urgent cases, a single gene assay (Biocartis Idylla BRAF test) can be requested. Turnaround time is 1-2 working days.

Please contact the department on 307 4949 ext 22008


Assay Method

The Agena Mass Array (Oncofocus V3) used in this assay will identify the presence of over 300 somatic mutations involving 5 oncogenes simultaneously. The OncoFocus panel ( BRAF, EGFR, C-KIT, KRAS & NRAS ) has an assay sensitivity of at least 7.5% mutation detection and has been validated on formalin fixed paraffin embedded tissue from a variety of tumours including Papillary thyroid carcinoma (PTC), Melanoma, Lung cancer/adenocarcinoma/NSCLC a nd colorectal cancer (CRC) . For a full mutation list, please refer to the AGENA website.


Diagnostic Use and Interpretation

DIAGNOSTIC USE

Papillary thyroid carcinoma (PTC) accounts for approximately 80% of all thyroid cancers. The BRAF gene mutation (V600E) is the most common genetic alteration in PTC (detected in up to 83% of cases; Frasca et al ., 2008). The detection of the BRAF proto-oncogene mutation (V600E) can help in the diagnosis of thyroid tumors, especially for indeterminate cases, and may also predict a favourable response to inhibitors targeting RAF and other MEK pathway members.

A ctivating mutations of the BRAF oncogene have been observed in approximately 50% of malignant melanomas (Rodolfo et al ., 2004). The V600E mutant accounts for 80-90 percent of these mutations, with the next most common V600K mutation representing 6-16% (Rubinstein et al ., 2011). The presence of the V600E or the V600K mutation may indicate if a tumour is likely to respond to therapy targeting the BRAF pathway.

Mutations in the BRAF gene are found in up to 15% of colorectal cancer patients, the presence which is associated with decreased overall survival. Several studies have reported that patients with metastatic CRC that harbor BRAF mutations do not respond to anti- EGFR antibody agents such as Cetuximab or Panitumumab. Similarly, response to BRAF inhibitors including Vemurafenib and Dabrafenib may also be low; response to other therapies is unknown at this time.

BRAF mutations are usually found in tumours wild type for EGFR, RAS , ALK rearrangements etc.


Contact Information

Results or General Enquiries: Lablink ext 22000, DDI (09) 307-8995 or 0800 522 7587.

Other contacts: Cytomolecular team ext 22012


Specimen Transport Instructions for Referring Laboratories

Specimen Handling Information

Specimen Transport

Ambient



Last updated at 10:49:39 29/08/2024